Merge from emacs-24; up to 2012-12-23T02:41:17Z!rgm@gnu.org

26 files changed, 618 insertions, 357 deletions

diff --git a/doc/emacs/ChangeLog b/doc/emacs/ChangeLog
index 44245441791..bd70b1fdebf 100644
--- a/doc/emacs/ChangeLog
+++ b/doc/emacs/ChangeLog
@@ -1,3 +1,7 @@
+2013-02-28  Bastien Guerry  <bzg@gnu.org>
+
+	* xresources.texi (GTK resources): Fix broken link.
+
 2013-02-25  Eli Zaretskii  <eliz@gnu.org>
 
 	* files.texi (Interlocking): Don't refer to symlinks as the
diff --git a/doc/emacs/xresources.texi b/doc/emacs/xresources.texi
index 7274a9df71c..3723c8e5e1d 100644
--- a/doc/emacs/xresources.texi
+++ b/doc/emacs/xresources.texi
@@ -507,7 +507,7 @@ those are governed by normal X resources (@pxref{Resources}).
 
   The following sections describe how to customize GTK+ resources for
 Emacs.  For details about GTK+ resources, see the GTK+ API document at
-@uref{http://developer.gnome.org/doc/API/2.0/gtk/gtk-Resource-Files.html}.
+@uref{http://developer.gnome.org/gtk2/stable/gtk2-Resource-Files.html}.
 
   In GTK+ version 3, GTK+ resources have been replaced by a completely
 different system.  The appearance of GTK+ widgets is now determined by
diff --git a/doc/lispref/ChangeLog b/doc/lispref/ChangeLog
index c4f45d02a05..42f5b5f5536 100644
--- a/doc/lispref/ChangeLog
+++ b/doc/lispref/ChangeLog
@@ -1,3 +1,7 @@
+2013-02-28  Bastien Guerry  <bzg@gnu.org>
+
+	* variables.texi (File Local Variables): Fix reference.
+
 2013-02-24  Eli Zaretskii  <eliz@gnu.org>
 
 	* files.texi (Magic File Names): Improve wording and indexing.
diff --git a/doc/lispref/variables.texi b/doc/lispref/variables.texi
index 3f4edebfb8b..4bcf7985f0c 100644
--- a/doc/lispref/variables.texi
+++ b/doc/lispref/variables.texi
@@ -1556,7 +1556,7 @@ an ordinary evaluated argument.
 
   A file can specify local variable values; Emacs uses these to create
 buffer-local bindings for those variables in the buffer visiting that
-file.  @xref{File variables, , Local Variables in Files, emacs, The
+file.  @xref{File Variables, , Local Variables in Files, emacs, The
 GNU Emacs Manual}, for basic information about file-local variables.
 This section describes the functions and variables that affect how
 file-local variables are processed.
diff --git a/doc/misc/ChangeLog b/doc/misc/ChangeLog
index 632f06d22b1..15b2b95026b 100644
--- a/doc/misc/ChangeLog
+++ b/doc/misc/ChangeLog
@@ -1,3 +1,15 @@
+2013-02-28  Bastien Guerry  <bzg@gnu.org>
+
+	* org.texi (Visibility cycling): Suggest to set
+	`org-agenda-inhibit-startup' to nil if user wants the startup
+	visibility settings to be honored in any circumstances.
+	(Progress logging, Checkboxes): Fix typos.
+
+2013-02-28  Michael Albinus  <michael.albinus@gmx.de>
+
+	* tramp.texi (top) [xxx, yyy, trampfn]: Provide two versions of
+	the macros, for Texinfo 4.13 and 5.0.
+
 2013-02-24  Michael Albinus  <michael.albinus@gmx.de>
 
 	Port Tramp documentation to Texinfo 5.0.
diff --git a/doc/misc/org.texi b/doc/misc/org.texi
index 16015e49362..1d7de18ada6 100644
--- a/doc/misc/org.texi
+++ b/doc/misc/org.texi
@@ -2,7 +2,7 @@
 @c %**start of header
 @setfilename ../../info/org
 @settitle The Org Manual
-@set VERSION 7.9.3e (GNU Emacs 24.3)
+@set VERSION 7.9.3f (GNU Emacs 24.3)
 
 @c Use proper quote and backtick for code sections in PDF output
 @c Cf. Texinfo manual 14.2
@@ -1296,6 +1296,7 @@ Copy the @i{visible} text in the region into the kill ring.
 @end table
 
 @vindex org-startup-folded
+@vindex org-agenda-inhibit-startup
 @cindex @code{overview}, STARTUP keyword
 @cindex @code{content}, STARTUP keyword
 @cindex @code{showall}, STARTUP keyword
@@ -1314,6 +1315,10 @@ buffer:
 #+STARTUP: showeverything
 @end example
 
+The startup visibility options are ignored when the file is open for the
+first time during the agenda generation: if you want the agenda to honor
+the startup visibility, set @code{org-agenda-inhibit-startup} to nil.
+
 @cindex property, VISIBILITY
 @noindent
 Furthermore, any entries with a @samp{VISIBILITY} property (@pxref{Properties
@@ -2439,7 +2444,7 @@ You may reference a rectangular range of fields by specifying two field
 references connected by two dots @samp{..}.  If both fields are in the
 current row, you may simply use @samp{$2..$7}, but if at least one field
 is in a different row, you need to use the general @code{@@row$column}
-format at least for the first field (i.e., the reference must start with
+format at least for the first field (i.e the reference must start with
 @samp{@@} in order to be interpreted correctly).  Examples:
 
 @example
@@ -4075,7 +4080,7 @@ module @file{org-depend.el}.
 
 Org mode can automatically record a timestamp and possibly a note when
 you mark a TODO item as DONE, or even each time you change the state of
-a TODO item.  This system is highly configurable, settings can be on a
+a TODO item.  This system is highly configurable; settings can be on a
 per-keyword basis and can be localized to a file or even a subtree.  For
 information on how to clock working time for a task, see @ref{Clocking
 work time}.
@@ -4431,7 +4436,7 @@ lists.  But you can allow it by modifying @code{org-list-automatic-rules}
 accordingly.} (@pxref{Plain lists}) can be made into a checkbox by starting
 it with the string @samp{[ ]}.  This feature is similar to TODO items
 (@pxref{TODO Items}), but is more lightweight.  Checkboxes are not included
-into the global TODO list, so they are often great to split a task into a
+in the global TODO list, so they are often great to split a task into a
 number of simple steps.  Or you can use them in a shopping list.  To toggle a
 checkbox, use @kbd{C-c C-c}, or use the mouse (thanks to Piotr Zielinski's
 @file{org-mouse.el}).
diff --git a/doc/misc/tramp.texi b/doc/misc/tramp.texi
index 00b5e1e8dc1..20598f2d9e5 100644
--- a/doc/misc/tramp.texi
+++ b/doc/misc/tramp.texi
@@ -20,6 +20,11 @@
 @c xxx and yyy are auxiliary macros in order to omit leading and
 @c trailing whitespace.  Not very elegant, but I don't know it better.
 
+@c There are subtle differences between texinfo 4.13 and 5.0.  We must
+@c declare two versions of the macro.  This will be improved, hopefully.
+
+@c Texinfo 5.0.
+@ifset txicommandconditionals
 @macro xxx {one}
 @set \one\
 @end macro
@@ -38,6 +43,26 @@
 @yyy{\user\,@@}@c
 \host\@value{postfix}\localname\
 @end macro
+@end ifset
+
+@c Texinfo 4.13.
+@ifclear txicommandconditionals
+@macro xxx {one}@c
+@set \one\@c
+@end macro
+
+@macro yyy {one, two}@c
+@xxx{x\one\}@c
+@ifclear x@c
+\one\@w{}\two\@c
+@end ifclear
+@clear x\one\@c
+@end macro
+
+@macro trampfn {method, user, host, localname}@c
+@value{prefix}@yyy{\method\,@value{postfixhop}}@yyy{\user\,@@}\host\@value{postfix}\localname\@c
+@end macro
+@end ifclear
 
 @copying
 Copyright @copyright{} 1999--2013 Free Software Foundation, Inc.
@@ -3892,3 +3917,4 @@ for @value{emacsothername}.
 @c * Use `filename' resp. `file name' consistently.
 @c * Use `host' resp. `machine' consistently.
 @c * Consistent small or capitalized words especially in menus.
+@c * Make a unique declaration of @trampfn.
diff --git a/etc/NEWS b/etc/NEWS
index 7d1110d5dc6..698757b2305 100644
--- a/etc/NEWS
+++ b/etc/NEWS
@@ -829,6 +829,63 @@ See the variable `calendar-month-header'.
 *** The calendars produced by cal-html include holidays.
 Customize `cal-html-holidays' to change this.
 
+** CEDET
+
+*** The major modes from the parser generators "Bovine" and "Wisent"
+are now properly integrated in Emacs.  The file suffixes ".by" and ".wy"
+are in `auto-mode-alist', and the corresponding manuals are included.
+
+*** EDE
+
+**** Menu support for the "Configuration" feature.  This allows users to
+choose the active configuration (such as debug or install) from the menu.
+
+**** New command `ede-set' to interactively set project-local variables.
+
+**** Support for compiling, debugging, and running in "generic" projects.
+
+**** Autoconf editing support for M4 macros with complex arguments.
+
+**** Compilation support for the "linux" project type.
+
+**** "simple" projects have been removed; use "generic" projects instead.
+
+*** Semantic
+
+**** Support for parsing #include statements inside a namespace in C/C++.
+
+**** Improved support for 'extern "C"' declarations in C/C++.
+
+**** The ability to ignore more common special C/C++ preprocessor symbols,
+such as '__nonnull' and '__asm'.  Add '__cplusplus' macro when parsing C++.
+If available, include cdefs.h as an additional source of preprocessor symbols.
+
+**** Improved C/C++ function pointer parsing.
+
+**** In Python, support for converting imports to include file names.
+
+**** Ability to dynamically determine the Python load path.
+
+**** Support for the Python 'WITH' and 'AT' keywords.
+
+**** Improved tooltip completion.
+
+*** SRecode
+
+**** The SRecode manual is now included.
+
+**** Tag generation supports constructor/destructor settings and system
+include differentiation.
+
+**** Addition of 'Framework' support: Frameworks are specified when a
+particular kind of library (such as Android) is needed in a common language
+mode (like Java).
+
+**** Support for nested templates and let variables override based on priority.
+
+**** Support for merging tables from multiple related modes, such as
+default -> c++ -> arduino.
+
 ** Compile has a new option `compilation-always-kill'.
 
 ** Customize
@@ -1168,6 +1225,25 @@ accessed via the new `timer--psecs' accessor.
 *** Last-modified time stamps in undo lists now are of the form
 (t HI-SECS LO-SECS USECS PSECS) instead of (t HI-SECS . LO-SECS).
 
+** EIEIO
+
+*** Improved security when handling persistent objects:
+
+**** `eieio-persistent-read' now features optional arguments for specifying
+the class to load, as well as a flag stating whether subclasses are allowed;
+if provided, other classes will be rejected by the reader.  For
+compatibility with existing code, if the class is omitted only a
+warning is issued.
+
+**** New specialized reader for pulling in classes and signaling errors
+without evaluation of suspicious code.
+
+**** All slots that contain objects must have a :type.  Slots with lists
+of objects must use a new type predicate for a list of an object type.
+
+*** Support for `find-function' and similar utilities, through the addition
+of filename support to generated symbols.
+
 ** Floating point functions now always return special values like NaN,
 instead of signaling errors, if given invalid args; e.g., (log -1.0).
 Previously, they returned NaNs on some platforms but signaled errors
diff --git a/lisp/ChangeLog b/lisp/ChangeLog
index d12c7043303..5c19dd26489 100644
--- a/lisp/ChangeLog
+++ b/lisp/ChangeLog
@@ -1,3 +1,7 @@
+2013-02-28  Glenn Morris  <rgm@gnu.org>
+
+	* textmodes/paragraphs.el (mark-paragraph): Doc fix.
+
 2013-02-28  Stefan Monnier  <monnier@iro.umontreal.ca>
 
 	* doc-view.el: Preserve h&v scroll across C-c C-c C-c C-c.
diff --git a/lisp/org/ChangeLog b/lisp/org/ChangeLog
index 16d456ed51f..5626b611f0d 100644
--- a/lisp/org/ChangeLog
+++ b/lisp/org/ChangeLog
@@ -1,3 +1,73 @@
+2013-02-28  Achim Gratz  <Stromeko@Stromeko.DE>
+
+	* org.el (org-org-menu): Use correct key "C-u C-c C-x !" to do
+	org-reload uncompiled in the menu.
+
+2013-02-28  Bastien Guerry  <bzg@gnu.org>
+
+	* org-indent.el (org-indent-add-properties): Bugfix: prevent
+	negative value for `added-ind-per-lvl'.
+
+	* org.el (org-mode): Add `org-fix-ellipsis-at-bol' to
+	`isearch-mode-end-hook' so that any isearch fixes the problem with
+	ellipsis on the first line.
+	(org-fix-ellipsis-at-bol): New defsubst.
+	(org-show-context, org-isearch-end): Use it.
+
+	* org.el (org-show-context): Remove useless catch.
+	Make sure the top of the window is a visible headline.
+	(org-activate-plain-links): Remove unused catch.
+
+	* org-macs.el (org-get-alist-option): Return nil, not (nil),
+	so that `org-show-context' DTRT.
+
+	* org.el (org-imenu-get-tree): Fix bug when matching against empty
+	headlines.
+
+	* org.el (org-overview): Stay on current line.
+	(org-map-entries): Fix docstring.
+	(org-at-clock-log-p): Delete.
+	* org-clock.el (org-at-clock-log-p): Move here.
+
+	* org.el (org-tsr-regexp-both): Don't activate dates in links.
+	(org-activate-dates): Change match boundaries according to the new
+	value of `org-tsr-regexp-both'.
+
+	* org-agenda.el (org-agenda-to-appt): Fix typos.
+
+	* org-agenda.el (org-agenda-local-vars): Don't include
+	`org-agenda-show-window' as it needs to be checked outside of the
+	agenda window.
+
+	* org.el (org-set-tags-command): Fix bug when setting tags for
+	multiple headlines in an active region.
+
+	* org-mobile.el (org-mobile-edit): DTRT when inserting a heading
+	in an invisible region.
+
+	* org.el (org-insert-heading-respect-content): Add docstring.
+	New `invisible-ok' parameter.
+	(org-insert-todo-heading-respect-content): Add docstring.
+
+	* ob-tangle.el (org-babel-tangle-collect-blocks):
+	Bugfix: remove code references from blocks.
+
+	* org-agenda.el (org-agenda-schedule, org-agenda-deadline):
+	Cosmetic changes.
+	(org-agenda-show-new-time): Fix bug when displaying a temporary
+	overlay with the scheduled/deadline information.
+
+	* org.el (org-fill-paragraph-with-timestamp-nobreak-p): New function.
+	(org-setup-filling): Use it to prevent breaking a timestamp when
+	filling a paragraph.
+
+	* org-id.el (org-id-get-with-outline-path-completion): Fix docstring.
+
+2013-02-28  Tim Burt  <tcburt@rochester.rr.com>  (tiny change)
+
+	* org-datetree.el (org-datetree-find-year-create):
+	Match headlines with tags.
+
 2013-02-07  Bastien Guerry  <bzg@gnu.org>
 
 	* org-agenda.el (org-agenda-get-deadlines)
diff --git a/lisp/org/ob-tangle.el b/lisp/org/ob-tangle.el
index 89457f19141..c3b6a483ee6 100644
--- a/lisp/org/ob-tangle.el
+++ b/lisp/org/ob-tangle.el
@@ -371,6 +371,10 @@ code blocks by language."
           (unless (and language (not (string= language src-lang)))
 	    (let* ((info (org-babel-get-src-block-info))
 		   (params (nth 2 info))
+		   (extra (nth 3 info))
+		   (cref-fmt (or (and (string-match "-l \"\\(.+\\)\"" extra)
+				      (match-string 1 extra))
+				 org-coderef-label-format))
 		   (link ((lambda (link)
 			    (and (string-match org-bracket-link-regexp link)
 				 (match-string 1 link)))
@@ -388,6 +392,11 @@ code blocks by language."
 		    ((lambda (body) ;; run the tangle-body-hook
 		       (with-temp-buffer
 			 (insert body)
+			 (when (string-match "-r" extra)
+			   (goto-char (point-min))
+			   (while (re-search-forward
+				   (replace-regexp-in-string "%s" ".+" cref-fmt) nil t)
+			     (replace-match "")))
 			 (run-hooks 'org-babel-tangle-body-hook)
 			 (buffer-string)))
 		     ((lambda (body) ;; expand the body in language specific manner
diff --git a/lisp/org/org-agenda.el b/lisp/org/org-agenda.el
index 9b6dcaed8c2..79217b6a6e6 100644
--- a/lisp/org/org-agenda.el
+++ b/lisp/org/org-agenda.el
@@ -1934,11 +1934,6 @@ When nil, `q' will kill the single agenda buffer."
 	   (message "Sticky agenda was %s"
 		    (if org-agenda-sticky "enabled" "disabled"))))))
 
-(autoload 'org-toggle-sticky-agenda "org-agenda" "\
-Toggle `org-agenda-sticky'.
-
-\(fn &optional ARG)" t nil)
-
 (defvar org-agenda-buffer nil
   "Agenda buffer currently being generated.")
 
@@ -1971,7 +1966,6 @@ Toggle `org-agenda-sticky'.
     org-agenda-last-search-view-search-was-boolean
     org-agenda-filtered-by-category
     org-agenda-filter-form
-    org-agenda-show-window
     org-agenda-cycle-counter
     org-agenda-last-prefix-arg)
   "Variables that must be local in agenda buffers to allow multiple buffers.")
@@ -2615,43 +2609,6 @@ Pressing `<' twice means to restrict to the current subtree or region
        ((equal org-keys "!") (customize-variable 'org-stuck-projects))
        (t (error "Invalid agenda key"))))))
 
-(autoload 'org-agenda "org-agenda" "\
-Dispatch agenda commands to collect entries to the agenda buffer.
-Prompts for a command to execute.  Any prefix arg will be passed
-on to the selected command.  The default selections are:
-
-a     Call `org-agenda-list' to display the agenda for current day or week.
-t     Call `org-todo-list' to display the global todo list.
-T     Call `org-todo-list' to display the global todo list, select only
-      entries with a specific TODO keyword (the user gets a prompt).
-m     Call `org-tags-view' to display headlines with tags matching
-      a condition  (the user is prompted for the condition).
-M     Like `m', but select only TODO entries, no ordinary headlines.
-L     Create a timeline for the current buffer.
-e     Export views to associated files.
-s     Search entries for keywords.
-S     Search entries for keywords, only with TODO keywords.
-/     Multi occur across all agenda files and also files listed
-      in `org-agenda-text-search-extra-files'.
-<     Restrict agenda commands to buffer, subtree, or region.
-      Press several times to get the desired effect.
->     Remove a previous restriction.
-#     List \"stuck\" projects.
-!     Configure what \"stuck\" means.
-C     Configure custom agenda commands.
-
-More commands can be added by configuring the variable
-`org-agenda-custom-commands'.  In particular, specific tags and TODO keyword
-searches can be pre-defined in this way.
-
-If the current buffer is in Org-mode and visiting a file, you can also
-first press `<' once to indicate that the agenda should be temporarily
-\(until the next use of \\[org-agenda]) restricted to the current file.
-Pressing `<' twice means to restrict to the current subtree or region
-\(if active).
-
-\(fn &optional ARG ORG-KEYS RESTRICTION)" t nil)
-
 (defun org-agenda-append-agenda ()
   "Append another agenda view to the current one.
 This function allows interactive building of block agendas.
@@ -2947,17 +2904,6 @@ before running the agenda command."
   (set-buffer org-agenda-buffer-name)
   (princ (buffer-string)))
 
-(autoload 'org-batch-agenda "org-agenda" "\
-Run an agenda command in batch mode and send the result to STDOUT.
-If CMD-KEY is a string of length 1, it is used as a key in
-`org-agenda-custom-commands' and triggers this command.  If it is a
-longer string it is used as a tags/todo match string.
-Parameters are alternating variable names and values that will be bound
-before running the agenda command.
-
-\(fn CMD-KEY &rest PARAMETERS)" nil t)
-(def-edebug-spec org-batch-agenda (form &rest sexp))
-
 (defvar org-agenda-info nil)
 
 ;;;###autoload
@@ -3015,44 +2961,6 @@ agenda-day   The day in the agenda where this is listed"
 		    ","))
 	(princ "\n")))))
 
-(autoload 'org-batch-agenda-csv "org-agenda" "\
-Run an agenda command in batch mode and send the result to STDOUT.
-If CMD-KEY is a string of length 1, it is used as a key in
-`org-agenda-custom-commands' and triggers this command.  If it is a
-longer string it is used as a tags/todo match string.
-Parameters are alternating variable names and values that will be bound
-before running the agenda command.
-
-The output gives a line for each selected agenda item.  Each
-item is a list of comma-separated values, like this:
-
-category,head,type,todo,tags,date,time,extra,priority-l,priority-n
-
-category     The category of the item
-head         The headline, without TODO kwd, TAGS and PRIORITY
-type         The type of the agenda entry, can be
-                todo               selected in TODO match
-                tagsmatch          selected in tags match
-                diary              imported from diary
-                deadline           a deadline on given date
-                scheduled          scheduled on given date
-                timestamp          entry has timestamp on given date
-                closed             entry was closed on given date
-                upcoming-deadline  warning about deadline
-                past-scheduled     forwarded scheduled item
-                block              entry has date block including g. date
-todo         The todo keyword, if any
-tags         All tags including inherited ones, separated by colons
-date         The relevant date, like 2007-2-14
-time         The time, like 15:00-16:50
-extra        Sting with extra planning info
-priority-l   The priority letter if any was given
-priority-n   The computed numerical priority
-agenda-day   The day in the agenda where this is listed
-
-\(fn CMD-KEY &rest PARAMETERS)" nil t)
-(def-edebug-spec org-batch-agenda-csv (form &rest sexp))
-
 (defun org-fix-agenda-info (props)
   "Make sure all properties on an agenda item have a canonical form.
 This ensures the export commands can easily use it."
@@ -3100,11 +3008,6 @@ This ensures the export commands can easily use it."
   (interactive)
   (eval (list 'org-batch-store-agenda-views)))
 
-(autoload 'org-store-agenda-views "org-agenda" "\
-
-
-\(fn &rest PARAMETERS)" t nil)
-
 ;;;###autoload
 (defmacro org-batch-store-agenda-views (&rest parameters)
   "Run all custom agenda commands that have a file argument."
@@ -3140,12 +3043,6 @@ This ensures the export commands can easily use it."
 	  (and (get-buffer bufname)
 	       (kill-buffer bufname)))))))
 
-(autoload 'org-batch-store-agenda-views "org-agenda" "\
-Run all custom agenda commands that have a file argument.
-
-\(fn &rest PARAMETERS)" nil t)
-(def-edebug-spec org-batch-store-agenda-views (&rest sexp))
-
 (defvar org-agenda-current-span nil
   "The current span used in the agenda view.") ; local variable in the agenda buffer
 (defun org-agenda-mark-header-line (pos)
@@ -4204,20 +4101,6 @@ given in `org-agenda-start-on-weekday'."
       (setq buffer-read-only t)
       (message ""))))
 
-(autoload 'org-agenda-list "org-agenda" "\
-Produce a daily/weekly view from all files in variable `org-agenda-files'.
-The view will be for the current day or week, but from the overview buffer
-you will be able to go to other days/weeks.
-
-With a numeric prefix argument in an interactive call, the agenda will
-span ARG days.  Lisp programs should instead specify SPAN to change
-the number of days.  SPAN defaults to `org-agenda-span'.
-
-START-DAY defaults to TODAY, or to the most recent match for the weekday
-given in `org-agenda-start-on-weekday'.
-
-\(fn &optional ARG START-DAY SPAN)" t nil)
-
 (defun org-agenda-ndays-to-span (n)
   "Return a span symbol for a span of N days, or N if none matches."
   (cond ((symbolp n) n)
@@ -4527,52 +4410,6 @@ in `org-agenda-text-search-extra-files'."
       (org-agenda-finalize)
       (setq buffer-read-only t))))
 
-(autoload 'org-search-view "org-agenda" "\
-Show all entries that contain a phrase or words or regular expressions.
-
-With optional prefix argument TODO-ONLY, only consider entries that are
-TODO entries.  The argument STRING can be used to pass a default search
-string into this function.  If EDIT-AT is non-nil, it means that the
-user should get a chance to edit this string, with cursor at position
-EDIT-AT.
-
-The search string can be viewed either as a phrase that should be found as
-is, or it can be broken into a number of snippets, each of which must match
-in a Boolean way to select an entry.  The default depends on the variable
-`org-agenda-search-view-always-boolean'.
-Even if this is turned off (the default) you can always switch to
-Boolean search dynamically by preceding the first word with  \"+\" or \"-\".
-
-The default is a direct search of the whole phrase, where each space in
-the search string can expand to an arbitrary amount of whitespace,
-including newlines.
-
-If using a Boolean search, the search string is split on whitespace and
-each snippet is searched separately, with logical AND to select an entry.
-Words prefixed with a minus must *not* occur in the entry.  Words without
-a prefix or prefixed with a plus must occur in the entry.  Matching is
-case-insensitive.  Words are enclosed by word delimiters (i.e. they must
-match whole words, not parts of a word) if
-`org-agenda-search-view-force-full-words' is set (default is nil).
-
-Boolean search snippets enclosed by curly braces are interpreted as
-regular expressions that must or (when preceded with \"-\") must not
-match in the entry.  Snippets enclosed into double quotes will be taken
-as a whole, to include whitespace.
-
-- If the search string starts with an asterisk, search only in headlines.
-- If (possibly after the leading star) the search string starts with an
-  exclamation mark, this also means to look at TODO entries only, an effect
-  that can also be achieved with a prefix argument.
-- If (possibly after star and exclamation mark) the search string starts
-  with a colon, this will mean that the (non-regexp) snippets of the
-  Boolean search must match as full words.
-
-This command searches the agenda files, and in addition the files listed
-in `org-agenda-text-search-extra-files'.
-
-\(fn &optional TODO-ONLY STRING EDIT-AT)" t nil)
-
 ;;; Agenda TODO list
 
 (defvar org-select-this-todo-keyword nil)
@@ -4663,15 +4500,6 @@ for a keyword.  A numeric prefix directly selects the Nth keyword in
       (org-agenda-finalize)
       (setq buffer-read-only t))))
 
-(autoload 'org-todo-list "org-agenda" "\
-Show all (not done) TODO entries from all agenda file in a single list.
-The prefix arg can be used to select a specific TODO keyword and limit
-the list to these.  When using \\[universal-argument], you will be prompted
-for a keyword.  A numeric prefix directly selects the Nth keyword in
-`org-todo-keywords-1'.
-
-\(fn &optional ARG)" t nil)
-
 ;;; Agenda tags match
 
 ;;;###autoload
@@ -4757,12 +4585,6 @@ The prefix arg TODO-ONLY limits the search to TODO entries."
       (org-agenda-finalize)
       (setq buffer-read-only t))))
 
-(autoload 'org-tags-view "org-agenda" "\
-Show all headlines for all `org-agenda-files' matching a TAGS criterion.
-The prefix arg TODO-ONLY limits the search to TODO entries.
-
-\(fn &optional TODO-ONLY MATCH)" t nil)
-
 ;;; Agenda Finding stuck projects
 
 (defvar org-agenda-skip-regexp nil
@@ -4991,14 +4813,6 @@ of what a project is and how to check if it stuck, customize the variable
       (setq org-agenda-redo-command
 	    `(org-agenda-list-stuck-projects ,current-prefix-arg)))))
 
-(autoload 'org-agenda-list-stuck-projects "org-agenda" "\
-Create agenda view for projects that are stuck.
-Stuck projects are project that have no next actions.  For the definitions
-of what a project is and how to check if it stuck, customize the variable
-`org-stuck-projects'.
-
-\(fn &rest IGNORE)" t nil)
-
 ;;; Diary integration
 
 (defvar org-disable-agenda-to-diary nil)          ;Dynamically-scoped param.
@@ -5177,35 +4991,6 @@ function from a program - use `org-agenda-get-day-entries' instead."
     (if results
 	(concat (org-agenda-finalize-entries results) "\n"))))
 
-(autoload 'org-diary "org-agenda" "\
-Return diary information from org files.
-This function can be used in a \"sexp\" diary entry in the Emacs calendar.
-It accesses org files and extracts information from those files to be
-listed in the diary.  The function accepts arguments specifying what
-items should be listed.  For a list of arguments allowed here, see the
-variable `org-agenda-entry-types'.
-
-The call in the diary file should look like this:
-
-   &%%(org-diary) ~/path/to/some/orgfile.org
-
-Use a separate line for each org file to check.  Or, if you omit the file name,
-all files listed in `org-agenda-files' will be checked automatically:
-
-   &%%(org-diary)
-
-If you don't give any arguments (as in the example above), the default
-arguments (:deadline :scheduled :timestamp :sexp) are used.
-So the example above may also be written as
-
-   &%%(org-diary :deadline :timestamp :sexp :scheduled)
-
-The function expects the lisp variables `entry' and `date' to be provided
-by the caller, because this is how the calendar works.  Don't use this
-function from a program - use `org-agenda-get-day-entries' instead.
-
-\(fn &rest ARGS)" nil nil)
-
 ;;; Agenda entry finders
 
 (defun org-agenda-get-day-entries (file date &rest args)
@@ -5401,11 +5186,6 @@ This function is invoked if `org-agenda-todo-ignore-deadlines',
 			(match-string 1) org-agenda-todo-ignore-timestamp))
 		      (t))))))))))
 
-(autoload 'org-agenda-check-for-timestamp-as-reason-to-ignore-todo-item "org-agenda" "\
-Do we have a reason to ignore this TODO entry because it has a time stamp?
-
-\(fn &optional END)" nil nil)
-
 (defun org-agenda-get-timestamps (&optional deadline-results)
   "Return the date stamp information for agenda display."
   (let* ((props (list 'face 'org-agenda-calendar-event
@@ -8686,9 +8466,8 @@ Called with a universal prefix arg, show the priority instead of setting it."
 (defun org-agenda-show-new-time (marker stamp &optional prefix)
   "Show new date stamp via text properties."
   ;; We use text properties to make this undoable
-  (let ((inhibit-read-only t)
-	(buffer-invisibility-spec))
-    (setq stamp (concat " " prefix " => " stamp))
+  (let ((inhibit-read-only t))
+    (setq stamp (concat prefix " => " stamp " "))
     (save-excursion
       (goto-char (point-max))
       (while (not (bobp))
@@ -8750,7 +8529,7 @@ ARG is passed through to `org-schedule'."
 	(widen)
 	(goto-char pos)
 	(setq ts (org-schedule arg time)))
-      (org-agenda-show-new-time marker ts "S"))
+      (org-agenda-show-new-time marker ts " S"))
     (message "%s" ts)))
 
 (defun org-agenda-deadline (arg &optional time)
@@ -8770,7 +8549,7 @@ ARG is passed through to `org-deadline'."
 	(widen)
 	(goto-char pos)
 	(setq ts (org-deadline arg time)))
-      (org-agenda-show-new-time marker ts "D"))
+      (org-agenda-show-new-time marker ts " D"))
     (message "%s" ts)))
 
 (defun org-agenda-clock-in (&optional arg)
@@ -9131,12 +8910,6 @@ This is a command that has to be installed in `calendar-mode-map'."
 			(calendar-cursor-to-date))
 		   nil))
 
-(autoload 'org-calendar-goto-agenda "org-agenda" "\
-Compute the Org-mode agenda for the calendar date displayed at the cursor.
-This is a command that has to be installed in `calendar-mode-map'.
-
-\(fn)" t nil)
-
 (defun org-agenda-convert-date ()
   (interactive)
   (org-agenda-check-type t 'agenda 'timeline)
@@ -9519,7 +9292,7 @@ By default `org-agenda-to-appt' will use :deadline, :scheduled
 and :timestamp entries.  See the docstring of `org-diary' for
 details and examples.
 
-If an entry as a APPT_WARNTIME property, its value will be used
+If an entry has a APPT_WARNTIME property, its value will be used
 to override `appt-message-warning-time'."
   (interactive "P")
   (if refresh (setq appt-time-msg-list nil))
@@ -9579,40 +9352,6 @@ to override `appt-message-warning-time'."
 	(message "No event to add")
       (message "Added %d event%s for today" cnt (if (> cnt 1) "s" "")))))
 
-(autoload 'org-agenda-to-appt "org-agenda" "\
-Activate appointments found in `org-agenda-files'.
-With a \\[universal-argument] prefix, refresh the list of
-appointments.
-
-If FILTER is t, interactively prompt the user for a regular
-expression, and filter out entries that don't match it.
-
-If FILTER is a string, use this string as a regular expression
-for filtering entries out.
-
-If FILTER is a function, filter out entries against which
-calling the function returns nil.  This function takes one
-argument: an entry from `org-agenda-get-day-entries'.
-
-FILTER can also be an alist with the car of each cell being
-either 'headline or 'category.  For example:
-
-  '((headline \"IMPORTANT\")
-    (category \"Work\"))
-
-will only add headlines containing IMPORTANT or headlines
-belonging to the \"Work\" category.
-
-ARGS are symbols indicating what kind of entries to consider.
-By default `org-agenda-to-appt' will use :deadline, :scheduled
-and :timestamp entries.  See the docstring of `org-diary' for
-details and examples.
-
-If an entry as a APPT_WARNTIME property, its value will be used
-to override `appt-message-warning-time'.
-
-\(fn &optional REFRESH FILTER &rest ARGS)" t nil)
-
 (defun org-agenda-todayp (date)
   "Does DATE mean today, when considering `org-extend-today-until'?"
   (let ((today (org-today))
diff --git a/lisp/org/org-clock.el b/lisp/org/org-clock.el
index bc0c431ddd3..a536d025c04 100644
--- a/lisp/org/org-clock.el
+++ b/lisp/org/org-clock.el
@@ -1545,12 +1545,6 @@ to, overriding the existing value of `org-clock-out-switch-to-state'."
 	  (org-remove-empty-drawer-at clock-drawer (point))
 	  (forward-line 1))))))
 
-(defun org-at-clock-log-p nil
-  "Is the cursor on the clock log line?"
-  (save-excursion
-    (move-beginning-of-line 1)
-    (looking-at "^[ \t]*CLOCK:")))
-
 (defun org-clock-timestamps-up nil
   "Increase CLOCK timestamps at cursor."
   (interactive)
diff --git a/lisp/org/org-datetree.el b/lisp/org/org-datetree.el
index f2e35fa2dfd..e0f4d10bc2d 100644
--- a/lisp/org/org-datetree.el
+++ b/lisp/org/org-datetree.el
@@ -72,7 +72,7 @@ tree can be found."
       (goto-char (prog1 (point) (widen))))))
 
 (defun org-datetree-find-year-create (year)
-  (let ((re "^\\*+[ \t]+\\([12][0-9][0-9][0-9]\\)\\s-*$")
+  (let ((re "^\\*+[ \t]+\\([12][0-9]\\{3\\}\\)\\(.*?\\([ \t]:[[:alnum:]:_@#%]+:\\)?\\s-*$\\)")
 	match)
     (goto-char (point-min))
     (while (and (setq match (re-search-forward re nil t))
diff --git a/lisp/org/org-docview.el b/lisp/org/org-docview.el
index 64c215d8db5..be99ad99a69 100644
--- a/lisp/org/org-docview.el
+++ b/lisp/org/org-docview.el
@@ -49,7 +49,7 @@
 (declare-function image-mode-window-get "ext:image-mode"
 		  (prop &optional winprops))
 
-(autoload 'doc-view-goto-page "doc-view")
+(org-autoload "doc-view" '(doc-view-goto-page))
 
 (org-add-link-type "docview" 'org-docview-open)
 (add-hook 'org-store-link-functions 'org-docview-store-link)
diff --git a/lisp/org/org-id.el b/lisp/org/org-id.el
index 6e865b50c2c..ecf67f72f3a 100644
--- a/lisp/org/org-id.el
+++ b/lisp/org/org-id.el
@@ -259,11 +259,11 @@ In any case, the ID of the entry is returned."
 	id)))))
 
 (defun org-id-get-with-outline-path-completion (&optional targets)
-  "Use outline-path-completion to retrieve the ID of an entry.
-TARGETS may be a setting for `org-refile-targets' to define the eligible
-headlines.  When omitted, all headlines in all agenda files are
-eligible.
-It returns the ID of the entry.  If necessary, the ID is created."
+  "Use `outline-path-completion' to retrieve the ID of an entry.
+TARGETS may be a setting for `org-refile-targets' to define
+eligible headlines.  When omitted, all headlines in the current
+file are eligible.  This function returns the ID of the entry.
+If necessary, the ID is created."
   (let* ((org-refile-targets (or targets '((nil . (:maxlevel . 10)))))
 	 (org-refile-use-outline-path
 	  (if (caar org-refile-targets) 'file t))
diff --git a/lisp/org/org-indent.el b/lisp/org/org-indent.el
index d5f17b2cb69..6e6f2bf1589 100644
--- a/lisp/org/org-indent.el
+++ b/lisp/org/org-indent.el
@@ -328,7 +328,7 @@ stopped."
      ;;    inline task or not.
      (let* ((case-fold-search t)
 	    (limited-re (org-get-limited-outline-regexp))
-	    (added-ind-per-lvl (1- org-indent-indentation-per-level))
+	    (added-ind-per-lvl (abs (1- org-indent-indentation-per-level)))
 	    (pf (save-excursion
 		  (and (ignore-errors (let ((outline-regexp limited-re))
 					(org-back-to-heading t)))
diff --git a/lisp/org/org-macs.el b/lisp/org/org-macs.el
index ceee30601bd..57b2d8a577e 100644
--- a/lisp/org/org-macs.el
+++ b/lisp/org/org-macs.el
@@ -263,7 +263,8 @@ in `org-rm-props'."
   (cond ((eq key t) t)
 	((eq option t) t)
 	((assoc key option) (cdr (assoc key option)))
-	(t (cdr (assq 'default option)))))
+	(t (let ((r (cdr (assq 'default option))))
+	     (if (listp r) (delq nil r) r)))))
 
 (defsubst org-check-external-command (cmd &optional use no-error)
   "Check if external program CMD for USE exists, error if not.
diff --git a/lisp/org/org-mobile.el b/lisp/org/org-mobile.el
index a410de0d775..293d2a000c0 100644
--- a/lisp/org/org-mobile.el
+++ b/lisp/org/org-mobile.el
@@ -1064,7 +1064,7 @@ be returned that indicates what went wrong."
       (if (org-on-heading-p) ; if false we are in top-level of file
 	  (progn
 	    (end-of-line 1)
-	    (org-insert-heading-respect-content)
+	    (org-insert-heading-respect-content t)
 	    (org-demote))
 	(beginning-of-line)
 	(insert "* "))
diff --git a/lisp/org/org-version.el b/lisp/org/org-version.el
index 1910d3f7b4f..4fa865308e9 100644
--- a/lisp/org/org-version.el
+++ b/lisp/org/org-version.el
@@ -5,13 +5,13 @@
 (defun org-release ()
   "The release version of org-mode.
   Inserted by installing org-mode or when a release is made."
-   (let ((org-release "7.9.3e"))
+   (let ((org-release "7.9.3f"))
      org-release))
 ;;;###autoload
 (defun org-git-version ()
   "The Git version of org-mode.
   Inserted by installing org-mode or when a release is made."
-   (let ((org-git-version "7.9.3e-3-gb07a9b"))
+   (let ((org-git-version "release_7.9.3f-17-g7524ef"))
      org-git-version))
 ;;;###autoload
 (defvar org-odt-data-dir "/usr/share/emacs/etc/org"
diff --git a/lisp/org/org.el b/lisp/org/org.el
index ede633a0a93..cc4c93f22eb 100644
--- a/lisp/org/org.el
+++ b/lisp/org/org.el
@@ -114,7 +114,6 @@ Stars are put in group 1 and the trimmed body in group 2.")
 (declare-function org-inlinetask-outline-regexp "org-inlinetask" ())
 (declare-function org-inlinetask-toggle-visibility "org-inlinetask" ())
 (declare-function org-pop-to-buffer-same-window "org-compat" (&optional buffer-or-name norecord label))
-(declare-function org-at-clock-log-p "org-clock" ())
 (declare-function org-clock-timestamps-up "org-clock" ())
 (declare-function org-clock-timestamps-down "org-clock" ())
 (declare-function org-clock-sum-current-item "org-clock" (&optional tstart))
@@ -467,7 +466,11 @@ the following lines anywhere in the buffer:
    #+STARTUP: fold              (or `overview', this is equivalent)
    #+STARTUP: nofold            (or `showall', this is equivalent)
    #+STARTUP: content
-   #+STARTUP: showeverything"
+   #+STARTUP: showeverything
+
+By default, this option is ignored when Org opens agenda files
+for the first time.  If you want the agenda to honor the startup
+option, set `org-agenda-inhibit-startup' to nil."
   :group 'org-startup
   :type '(choice
 	  (const :tag "nofold: show all" nil)
@@ -3913,6 +3916,7 @@ If TABLE-TYPE is non-nil, also check for table.el-type tables."
        (save-excursion
 	 (goto-char (org-table-begin 'any))
 	 (looking-at org-table1-hline-regexp))))
+
 (defun org-table-recognize-table.el ()
   "If there is a table.el table nearby, recognize it and move into it."
   (if org-table-tab-recognizes-table.el
@@ -3948,7 +3952,6 @@ If TABLE-TYPE is non-nil, also check for table.el-type tables."
     nil))
 
 (defvar org-table-clean-did-remove-column nil)
-
 (defun org-table-map-tables (function &optional quietly)
   "Apply FUNCTION to the start of all tables in the buffer."
   (save-excursion
@@ -4969,7 +4972,8 @@ The following commands are available:
       (org-add-hook 'isearch-mode-end-hook 'org-isearch-end 'append 'local)
     ;; Emacs 22 deals with this through a special variable
     (org-set-local 'outline-isearch-open-invisible-function
-		   (lambda (&rest ignore) (org-show-context 'isearch))))
+		   (lambda (&rest ignore) (org-show-context 'isearch)))
+    (org-add-hook 'isearch-mode-end-hook 'org-fix-ellipsis-at-bol 'append 'local))
 
   ;; Setup the pcomplete hooks
   (set (make-local-variable 'pcomplete-command-completion-function)
@@ -5008,6 +5012,8 @@ The following commands are available:
 
 (put 'org-mode 'flyspell-mode-predicate 'org-mode-flyspell-verify)
 
+(defsubst org-fix-ellipsis-at-bol ()
+  (save-excursion (goto-char (window-start)) (recenter 0)))
 
 (defun org-find-invisible-foreground ()
   (let ((candidates (remove
@@ -5205,8 +5211,9 @@ on a string that terminates immediately after the date.")
 (defconst org-tsr-regexp (concat org-ts-regexp "\\(--?-?"
 				 org-ts-regexp "\\)?")
   "Regular expression matching a time stamp or time stamp range.")
-(defconst org-tsr-regexp-both (concat org-ts-regexp-both "\\(--?-?"
-				      org-ts-regexp-both "\\)?")
+(defconst org-tsr-regexp-both
+  (concat org-ts-regexp-both "\\(--?-?"
+	  org-ts-regexp-both "\\)?")
   "Regular expression matching a time stamp or time stamp range.
 The time stamps may be either active or inactive.")
 
@@ -5298,21 +5305,20 @@ will be prompted for."
 
 (defun org-activate-plain-links (limit)
   "Run through the buffer and add overlays to links."
-  (catch 'exit
-    (let (f)
-      (when (and (re-search-forward (concat org-plain-link-re) limit t)
-		 (not (org-in-src-block-p)))
-	(org-remove-flyspell-overlays-in (match-beginning 0) (match-end 0))
-	(setq f (get-text-property (match-beginning 0) 'face))
-	(unless (or (org-in-src-block-p)
-		    (eq f 'org-tag)
-		    (and (listp f) (memq 'org-tag f)))
-	  (add-text-properties (match-beginning 0) (match-end 0)
-			       (list 'mouse-face 'highlight
-				     'face 'org-link
-				     'keymap org-mouse-map))
-	  (org-rear-nonsticky-at (match-end 0)))
-	t))))
+  (let (f)
+    (when (and (re-search-forward (concat org-plain-link-re) limit t)
+	       (not (org-in-src-block-p)))
+      (org-remove-flyspell-overlays-in (match-beginning 0) (match-end 0))
+      (setq f (get-text-property (match-beginning 0) 'face))
+      (unless (or (org-in-src-block-p)
+		  (eq f 'org-tag)
+		  (and (listp f) (memq 'org-tag f)))
+	(add-text-properties (match-beginning 0) (match-end 0)
+			     (list 'mouse-face 'highlight
+				   'face 'org-link
+				   'keymap org-mouse-map))
+	(org-rear-nonsticky-at (match-end 0)))
+      t)))
 
 (defun org-activate-code (limit)
   (if (re-search-forward "^[ \t]*\\(:\\(?: .*\\|$\\)\n?\\)" limit t)
@@ -5510,7 +5516,8 @@ by a #."
 
 (defun org-activate-dates (limit)
   "Run through the buffer and add overlays to dates."
-  (if (re-search-forward org-tsr-regexp-both limit t)
+  (if (and (re-search-forward org-tsr-regexp-both limit t)
+	   (not (equal (char-before (match-beginning 0)) 91)))
       (progn
 	(org-remove-flyspell-overlays-in (match-beginning 0) (match-end 0))
 	(add-text-properties (match-beginning 0) (match-end 0)
@@ -6431,13 +6438,16 @@ of the first headline in the buffer.  This is important, because if the
 first headline is not level one, then (hide-sublevels 1) gives confusing
 results."
   (interactive)
-  (let ((level (save-excursion
+  (let ((l (org-current-line))
+	(level (save-excursion
 		 (goto-char (point-min))
 		 (if (re-search-forward (concat "^" outline-regexp) nil t)
 		     (progn
 		       (goto-char (match-beginning 0))
 		       (funcall outline-level))))))
-    (and level (hide-sublevels level))))
+    (and level (hide-sublevels level))
+    (recenter '(4))
+    (org-goto-line l)))
 
 (defun org-content (&optional arg)
   "Show all headlines in the buffer, like a table of contents.
@@ -7231,12 +7241,14 @@ This is a list with the following elements:
   (org-move-subtree-down)
   (end-of-line 1))
 
-(defun org-insert-heading-respect-content ()
-  (interactive)
+(defun org-insert-heading-respect-content (invisible-ok)
+  "Insert heading with `org-insert-heading-respect-content' set to t."
+  (interactive "P")
   (let ((org-insert-heading-respect-content t))
-    (org-insert-heading t)))
+    (org-insert-heading t invisible-ok)))
 
 (defun org-insert-todo-heading-respect-content (&optional force-state)
+  "Insert TODO heading with `org-insert-heading-respect-content' set to t."
   (interactive "P")
   (let ((org-insert-heading-respect-content t))
     (org-insert-todo-heading force-state t)))
@@ -12835,27 +12847,27 @@ How much context is shown depends upon the variables
 	(following-p (org-get-alist-option org-show-following-heading key))
 	(entry-p     (org-get-alist-option org-show-entry-below key))
 	(siblings-p  (org-get-alist-option org-show-siblings key)))
-    (catch 'exit
-      ;; Show heading or entry text
-      (if (and heading-p (not entry-p))
-	  (org-flag-heading nil)    ; only show the heading
-	(and (or entry-p (outline-invisible-p) (org-invisible-p2))
-	     (org-show-hidden-entry)))    ; show entire entry
-      (when following-p
-	;; Show next sibling, or heading below text
-	(save-excursion
-	  (and (if heading-p (org-goto-sibling) (outline-next-heading))
-	       (org-flag-heading nil))))
-      (when siblings-p (org-show-siblings))
-      (when hierarchy-p
-	;; show all higher headings, possibly with siblings
-	(save-excursion
-	  (while (and (condition-case nil
-			  (progn (org-up-heading-all 1) t)
-			(error nil))
-		      (not (bobp)))
-	    (org-flag-heading nil)
-	    (when siblings-p (org-show-siblings))))))))
+    ;; Show heading or entry text
+    (if (and heading-p (not entry-p))
+	(org-flag-heading nil)    ; only show the heading
+      (and (or entry-p (outline-invisible-p) (org-invisible-p2))
+	   (org-show-hidden-entry)))    ; show entire entry
+    (when following-p
+      ;; Show next sibling, or heading below text
+      (save-excursion
+	(and (if heading-p (org-goto-sibling) (outline-next-heading))
+	     (org-flag-heading nil))))
+    (when siblings-p (org-show-siblings))
+    (when hierarchy-p
+      ;; show all higher headings, possibly with siblings
+      (save-excursion
+	(while (and (condition-case nil
+			(progn (org-up-heading-all 1) t)
+		      (error nil))
+		    (not (bobp)))
+	  (org-flag-heading nil)
+	  (when siblings-p (org-show-siblings)))))
+    (org-fix-ellipsis-at-bol)))
 
 (defvar org-reveal-start-hook nil
   "Hook run before revealing a location.")
@@ -13597,7 +13609,9 @@ If ONOFF is `on' or `off', don't toggle but set to this state."
   (if (or (org-at-heading-p) (and arg (org-before-first-heading-p)))
       (org-set-tags arg just-align)
     (save-excursion
-      (org-back-to-heading t)
+      (unless (and (org-region-active-p)
+		   org-loop-over-headlines-in-active-region)
+	(org-back-to-heading t))
       (org-set-tags arg just-align))))
 
 (defun org-set-tags-to (data)
@@ -14101,13 +14115,13 @@ agenda-with-archives
 The remaining args are treated as settings for the skipping facilities of
 the scanner.  The following items can be given here:
 
-  archive    skip trees with the archive tag.
+  archive    skip trees with the archive tag
   comment    skip trees with the COMMENT keyword
   function or Emacs Lisp form:
-             will be used as value for `org-agenda-skip-function', so whenever
-             the function returns t, FUNC will not be called for that
-             entry and search will continue from the point where the
-             function leaves it.
+             will be used as value for `org-agenda-skip-function', so
+             whenever the function returns a position, FUNC will not be
+             called for that entry and search will continue from the
+             position returned
 
 If your function needs to retrieve the tags including inherited tags
 at the *current* entry, you can use the value of the variable
@@ -16401,6 +16415,12 @@ With prefix ARG, change that many days."
       (message "Timestamp is now %sactive"
 	       (if (equal (char-after beg) ?<) "" "in")))))
 
+(defun org-at-clock-log-p nil
+  "Is the cursor on the clock log line?"
+  (save-excursion
+    (move-beginning-of-line 1)
+    (looking-at "^[ \t]*CLOCK:")))
+
 (defvar org-clock-history)                     ; defined in org-clock.el
 (defvar org-clock-adjust-closest nil)          ; defined in org-clock.el
 (defun org-timestamp-change (n &optional what updown)
@@ -18737,8 +18757,7 @@ this function returns t, nil otherwise."
 		(throw 'exit t))))
 	nil))))
 
-(autoload 'org-element-at-point "org-element")
-(autoload 'org-element-type "org-element")
+(org-autoload "org-element" '(org-element-at-point org-element-type))
 
 (declare-function org-element-at-point "org-element" (&optional keep-trail))
 (declare-function org-element-type "org-element" (element))
@@ -19840,7 +19859,7 @@ See the individual commands for more information."
     ("Refresh/Reload"
      ["Refresh setup current buffer" org-mode-restart t]
      ["Reload Org (after update)" org-reload t]
-     ["Reload Org uncompiled" (org-reload t) :active t :keys "C-u C-c C-x r"])
+     ["Reload Org uncompiled" (org-reload t) :active t :keys "C-u C-c C-x !"])
     ))
 
 (defun org-info (&optional node)
@@ -20970,7 +20989,8 @@ hierarchy of headlines by UP levels before marking the subtree."
      (org-uniquify
       (append fill-nobreak-predicate
 	      '(org-fill-paragraph-separate-nobreak-p
-		org-fill-line-break-nobreak-p)))))
+		org-fill-line-break-nobreak-p
+		org-fill-paragraph-with-timestamp-nobreak-p)))))
   (org-set-local 'fill-paragraph-function 'org-fill-paragraph)
   (org-set-local 'auto-fill-inhibit-regexp nil)
   (org-set-local 'adaptive-fill-function 'org-adaptive-fill-function)
@@ -20989,6 +21009,11 @@ hierarchy of headlines by UP levels before marking the subtree."
     (skip-chars-backward "\\\\")
     (looking-at "\\\\\\\\\\($\\|[^\\\\]\\)")))
 
+(defun org-fill-paragraph-with-timestamp-nobreak-p ()
+  "Non-nil when a line break at point would insert a new item."
+  (and (org-at-timestamp-p t)
+       (not (looking-at org-ts-regexp-both))))
+
 (declare-function message-in-body-p "message" ())
 (defvar org-element--affiliated-re) ; From org-element.el
 (defvar orgtbl-line-start-regexp) ; From org-table.el
@@ -22159,7 +22184,8 @@ Show the heading too, if it is currently invisible."
 		   isearch-mode-end-hook-quit)
 	;; Only when the isearch was not quitted.
 	(org-add-hook 'post-command-hook 'org-isearch-post-command
-		      'append 'local)))))
+		      'append 'local)))
+    (org-fix-ellipsis-at-bol)))
 
 (defun org-isearch-post-command ()
   "Remove self from hook, and show context."
@@ -22190,7 +22216,7 @@ Show the heading too, if it is currently invisible."
 	 (re (concat "^" (org-get-limited-outline-regexp)))
 	 (subs (make-vector (1+ n) nil))
 	 (last-level 0)
-	 m level head)
+	 m level head0 head)
     (save-excursion
       (save-restriction
 	(widen)
@@ -22198,9 +22224,9 @@ Show the heading too, if it is currently invisible."
 	(while (re-search-backward re nil t)
 	  (setq level (org-reduced-level (funcall outline-level)))
 	  (when (and (<= level n)
-		     (looking-at org-complex-heading-regexp))
-	    (setq head (org-link-display-format
-			(org-match-string-no-properties 4))
+		     (looking-at org-complex-heading-regexp)
+		     (setq head0 (org-match-string-no-properties 4)))
+	    (setq head (org-link-display-format head0)
 		  m (org-imenu-new-marker))
 	    (org-add-props head nil 'org-imenu-marker m 'org-imenu t)
 	    (if (>= level last-level)
diff --git a/lisp/textmodes/paragraphs.el b/lisp/textmodes/paragraphs.el
index 4e17af1acb4..e773b53a73f 100644
--- a/lisp/textmodes/paragraphs.el
+++ b/lisp/textmodes/paragraphs.el
@@ -379,8 +379,8 @@ the number of paragraphs marked equals ARG.
 If ARG is negative, point is put at end of this paragraph, mark is put
 at beginning of this or a previous paragraph.
 
-Interactively, if this command is repeated
-or (in Transient Mark mode) if the mark is active,
+Interactively (or if ALLOW-EXTEND is non-nil), if this command is
+repeated or (in Transient Mark mode) if the mark is active,
 it marks the next ARG paragraphs after the ones already marked."
   (interactive "p\np")
   (unless arg (setq arg 1))
diff --git a/src/ChangeLog b/src/ChangeLog
index 4135dadf28a..1b8b3c56004 100644
--- a/src/ChangeLog
+++ b/src/ChangeLog
@@ -1,3 +1,8 @@
+2013-02-28  Eli Zaretskii  <eliz@gnu.org>
+
+	* w32.c (sys_open): Don't reset the flags for FD in fd_info[].
+	(Bug#13546).
+
 2013-02-27  Eli Zaretskii  <eliz@gnu.org>
 
 	* filelock.c (create_lock_file) [WINDOWSNT]: Use _sopen with
diff --git a/src/w32.c b/src/w32.c
index aff9771e4bb..f42b83af605 100644
--- a/src/w32.c
+++ b/src/w32.c
@@ -3411,8 +3411,6 @@ sys_open (const char * path, int oflag, int mode)
     res = _open (mpath, (oflag & ~_O_CREAT) | _O_NOINHERIT, mode);
   if (res < 0)
     res = _open (mpath, oflag | _O_NOINHERIT, mode);
-  if (res >= 0 && res < MAXDESC)
-    fd_info[res].flags = 0;
 
   return res;
 }
diff --git a/test/ChangeLog b/test/ChangeLog
index f1281c8ed72..fbd27021b5c 100644
--- a/test/ChangeLog
+++ b/test/ChangeLog
@@ -1,3 +1,22 @@
+2013-02-28  Fabián Ezequiel Gallina  <fgallina@cuca>
+
+	* automated/python-tests.el (python-tests-with-temp-buffer): Doc fix.
+	(python-tests-with-temp-file): New macro.
+	(python-tests-shell-interpreter): New var.
+	(python-shell-get-process-name-1)
+	(python-shell-internal-get-process-name-1)
+	(python-shell-parse-command-1)
+	(python-shell-calculate-process-environment-1)
+	(python-shell-calculate-process-environment-2)
+	(python-shell-calculate-process-environment-3)
+	(python-shell-calculate-exec-path-1)
+	(python-shell-calculate-exec-path-2)
+	(python-shell-make-comint-1)
+	(python-shell-make-comint-2)
+	(python-shell-get-process-1)
+	(python-shell-get-or-create-process-1)
+	(python-shell-internal-get-or-create-process-1): New tests.
+
 2013-02-21  Fabián Ezequiel Gallina  <fgallina@cuca>
 
 	* automated/python-tests.el: New file.
diff --git a/test/automated/python-tests.el b/test/automated/python-tests.el
index b38fbdd122f..ab8eb4816d3 100644
--- a/test/automated/python-tests.el
+++ b/test/automated/python-tests.el
@@ -34,6 +34,21 @@ always located at the beginning of buffer."
      (goto-char (point-min))
      ,@body))
 
+(defmacro python-tests-with-temp-file (contents &rest body)
+  "Create a `python-mode' enabled file with CONTENTS.
+BODY is code to be executed within the temp buffer.  Point is
+always located at the beginning of buffer."
+  (declare (indent 1) (debug t))
+  `(let* ((temp-file (concat (make-temp-file "python-tests") ".py"))
+          (buffer (find-file-noselect temp-file)))
+     (unwind-protect
+         (with-current-buffer buffer
+           (python-mode)
+           (insert ,contents)
+           (goto-char (point-min))
+           ,@body)
+       (and buffer (kill-buffer buffer)))))
+
 (defun python-tests-look-at (string &optional num restore-point)
   "Move point at beginning of STRING in the current buffer.
 Optional argument NUM defaults to 1 and is an integer indicating
@@ -1161,6 +1176,260 @@ def f():
 
 ;;; Shell integration
 
+(defvar python-tests-shell-interpreter "python")
+
+(ert-deftest python-shell-get-process-name-1 ()
+  "Check process name calculation on different scenarios."
+  (python-tests-with-temp-buffer
+      ""
+    (should (string= (python-shell-get-process-name nil)
+                     python-shell-buffer-name))
+    ;; When the `current-buffer' doesn't have `buffer-file-name', even
+    ;; if dedicated flag is non-nil should not include its name.
+    (should (string= (python-shell-get-process-name t)
+                     python-shell-buffer-name)))
+  (python-tests-with-temp-file
+      ""
+    ;; `buffer-file-name' is non-nil but the dedicated flag is nil and
+    ;; should be respected.
+    (should (string= (python-shell-get-process-name nil)
+                     python-shell-buffer-name))
+    (should (string=
+             (python-shell-get-process-name t)
+             (format "%s[%s]" python-shell-buffer-name buffer-file-name)))))
+
+(ert-deftest python-shell-internal-get-process-name-1 ()
+  "Check the internal process name is config-unique."
+  (let* ((python-shell-interpreter python-tests-shell-interpreter)
+         (python-shell-interpreter-args "")
+         (python-shell-prompt-regexp ">>> ")
+         (python-shell-prompt-block-regexp "[.][.][.] ")
+         (python-shell-setup-codes "")
+         (python-shell-process-environment "")
+         (python-shell-extra-pythonpaths "")
+         (python-shell-exec-path "")
+         (python-shell-virtualenv-path "")
+         (expected (python-tests-with-temp-buffer
+                       "" (python-shell-internal-get-process-name))))
+    ;; Same configurations should match.
+    (should
+     (string= expected
+              (python-tests-with-temp-buffer
+                  "" (python-shell-internal-get-process-name))))
+    (let ((python-shell-interpreter-args "-B"))
+      ;; A minimal change should generate different names.
+      (should
+       (not (string=
+             expected
+             (python-tests-with-temp-buffer
+                 "" (python-shell-internal-get-process-name))))))))
+
+(ert-deftest python-shell-parse-command-1 ()
+  "Check the command to execute is calculated correctly.
+Using `python-shell-interpreter' and
+`python-shell-interpreter-args'."
+  :expected-result (if (executable-find python-tests-shell-interpreter)
+                       :passed
+                     :failed)
+  (let ((python-shell-interpreter (executable-find
+                                   python-tests-shell-interpreter))
+        (python-shell-interpreter-args "-B"))
+    (should (string=
+             (format "%s %s"
+                     python-shell-interpreter
+                     python-shell-interpreter-args)
+             (python-shell-parse-command)))))
+
+(ert-deftest python-shell-calculate-process-environment-1 ()
+  "Test `python-shell-process-environment' modification."
+  (let* ((original-process-environment process-environment)
+         (python-shell-process-environment
+          '("TESTVAR1=value1" "TESTVAR2=value2"))
+         (process-environment
+          (python-shell-calculate-process-environment)))
+    (should (equal (getenv "TESTVAR1") "value1"))
+    (should (equal (getenv "TESTVAR2") "value2"))))
+
+(ert-deftest python-shell-calculate-process-environment-2 ()
+  "Test `python-shell-extra-pythonpaths' modification."
+  (let* ((original-process-environment process-environment)
+         (original-pythonpath (getenv "PYTHONPATH"))
+         (paths '("path1" "path2"))
+         (python-shell-extra-pythonpaths paths)
+         (process-environment
+          (python-shell-calculate-process-environment)))
+    (should (equal (getenv "PYTHONPATH")
+                   (concat
+                    (mapconcat 'identity paths path-separator)
+                    path-separator original-pythonpath)))))
+
+(ert-deftest python-shell-calculate-process-environment-3 ()
+  "Test `python-shell-virtualenv-path' modification."
+  (let* ((original-process-environment process-environment)
+         (original-path (or (getenv "PATH") ""))
+         (python-shell-virtualenv-path
+          (directory-file-name user-emacs-directory))
+         (process-environment
+          (python-shell-calculate-process-environment)))
+    (should (not (getenv "PYTHONHOME")))
+    (should (string= (getenv "VIRTUAL_ENV") python-shell-virtualenv-path))
+    (should (equal (getenv "PATH")
+                   (format "%s/bin%s%s"
+                           python-shell-virtualenv-path
+                           path-separator original-path)))))
+
+(ert-deftest python-shell-calculate-exec-path-1 ()
+  "Test `python-shell-exec-path' modification."
+  (let* ((original-exec-path exec-path)
+         (python-shell-exec-path '("path1" "path2"))
+         (exec-path (python-shell-calculate-exec-path)))
+    (should (equal
+             exec-path
+             (append python-shell-exec-path
+                     original-exec-path)))))
+
+(ert-deftest python-shell-calculate-exec-path-2 ()
+  "Test `python-shell-exec-path' modification."
+  (let* ((original-exec-path exec-path)
+         (python-shell-virtualenv-path
+          (directory-file-name user-emacs-directory))
+         (exec-path (python-shell-calculate-exec-path)))
+    (should (equal
+             exec-path
+             (append (cons
+                      (format "%s/bin" python-shell-virtualenv-path)
+                      original-exec-path))))))
+
+(ert-deftest python-shell-make-comint-1 ()
+  "Check comint creation for global shell buffer."
+  :expected-result (if (executable-find python-tests-shell-interpreter)
+                       :passed
+                     :failed)
+  (let* ((python-shell-interpreter
+          (executable-find python-tests-shell-interpreter))
+         (proc-name (python-shell-get-process-name nil))
+         (shell-buffer
+          (python-tests-with-temp-buffer
+              "" (python-shell-make-comint
+                  (python-shell-parse-command) proc-name)))
+         (process (get-buffer-process shell-buffer)))
+    (unwind-protect
+        (progn
+          (set-process-query-on-exit-flag process nil)
+          (should (process-live-p process))
+          (with-current-buffer shell-buffer
+            (should (eq major-mode 'inferior-python-mode))
+            (should (string= (buffer-name) (format "*%s*" proc-name)))))
+      (kill-buffer shell-buffer))))
+
+(ert-deftest python-shell-make-comint-2 ()
+  "Check comint creation for internal shell buffer."
+  :expected-result (if (executable-find python-tests-shell-interpreter)
+                       :passed
+                     :failed)
+  (let* ((python-shell-interpreter
+          (executable-find python-tests-shell-interpreter))
+         (proc-name (python-shell-internal-get-process-name))
+         (shell-buffer
+          (python-tests-with-temp-buffer
+              "" (python-shell-make-comint
+                  (python-shell-parse-command) proc-name nil t)))
+         (process (get-buffer-process shell-buffer)))
+    (unwind-protect
+        (progn
+          (set-process-query-on-exit-flag process nil)
+          (should (process-live-p process))
+          (with-current-buffer shell-buffer
+            (should (eq major-mode 'inferior-python-mode))
+            (should (string= (buffer-name) (format " *%s*" proc-name)))))
+      (kill-buffer shell-buffer))))
+
+(ert-deftest python-shell-get-process-1 ()
+  "Check dedicated shell process preference over global."
+  :expected-result (if (executable-find python-tests-shell-interpreter)
+                       :passed
+                     :failed)
+  (python-tests-with-temp-file
+      ""
+    (let* ((python-shell-interpreter
+            (executable-find python-tests-shell-interpreter))
+           (global-proc-name (python-shell-get-process-name nil))
+           (dedicated-proc-name (python-shell-get-process-name t))
+           (global-shell-buffer
+            (python-shell-make-comint
+             (python-shell-parse-command) global-proc-name))
+           (dedicated-shell-buffer
+            (python-shell-make-comint
+             (python-shell-parse-command) dedicated-proc-name))
+           (global-process (get-buffer-process global-shell-buffer))
+           (dedicated-process (get-buffer-process dedicated-shell-buffer)))
+      (unwind-protect
+          (progn
+            (set-process-query-on-exit-flag global-process nil)
+            (set-process-query-on-exit-flag dedicated-process nil)
+            ;; Prefer dedicated if global also exists.
+            (should (equal (python-shell-get-process) dedicated-process))
+            (kill-buffer dedicated-shell-buffer)
+            ;; If there's only global, use it.
+            (should (equal (python-shell-get-process) global-process))
+            (kill-buffer global-shell-buffer)
+            ;; No buffer available.
+            (should (not (python-shell-get-process))))
+        (ignore-errors (kill-buffer global-shell-buffer))
+        (ignore-errors (kill-buffer dedicated-shell-buffer))))))
+
+(ert-deftest python-shell-get-or-create-process-1 ()
+  "Check shell process creation fallback."
+  :expected-result :failed
+  (python-tests-with-temp-file
+      ""
+    ;; XXX: Break early until we can skip stuff.  We need to mimic
+    ;; user interaction because `python-shell-get-or-create-process'
+    ;; asks for all arguments interactively when a shell process
+    ;; doesn't exist.
+    (should nil)
+    (let* ((python-shell-interpreter
+            (executable-find python-tests-shell-interpreter))
+           (use-dialog-box)
+           (dedicated-process-name (python-shell-get-process-name t))
+           (dedicated-process (python-shell-get-or-create-process))
+           (dedicated-shell-buffer (process-buffer dedicated-process)))
+      (unwind-protect
+          (progn
+            (set-process-query-on-exit-flag dedicated-process nil)
+            ;; Prefer dedicated if not buffer exist.
+            (should (equal (process-name dedicated-process)
+                           dedicated-process-name))
+            (kill-buffer dedicated-shell-buffer)
+            ;; No buffer available.
+            (should (not (python-shell-get-process))))
+        (ignore-errors (kill-buffer dedicated-shell-buffer))))))
+
+(ert-deftest python-shell-internal-get-or-create-process-1 ()
+  "Check internal shell process creation fallback."
+  :expected-result (if (executable-find python-tests-shell-interpreter)
+                       :passed
+                     :failed)
+  (python-tests-with-temp-file
+      ""
+    (should (not (process-live-p (python-shell-internal-get-process-name))))
+    (let* ((python-shell-interpreter
+            (executable-find python-tests-shell-interpreter))
+           (internal-process-name (python-shell-internal-get-process-name))
+           (internal-process (python-shell-internal-get-or-create-process))
+           (internal-shell-buffer (process-buffer internal-process)))
+      (unwind-protect
+          (progn
+            (set-process-query-on-exit-flag internal-process nil)
+            (should (equal (process-name internal-process)
+                           internal-process-name))
+            (should (equal internal-process
+                           (python-shell-internal-get-or-create-process)))
+            ;; No user buffer available.
+            (should (not (python-shell-get-process)))
+            (kill-buffer internal-shell-buffer))
+        (ignore-errors (kill-buffer internal-shell-buffer))))))
+
 
 ;;; Shell completion